PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G137900.2
Common NameB456_002G137900, LOC105785246
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 299aa    MW: 34307.6 Da    PI: 5.1406
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G137900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.7e-10135177653
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 
                          ++ErrRR+r+N+++  Lr+++Pk +      K++  +iL  +++Y ++
  Gorai.002G137900.2 135 LMAERRRRKRLNDRLLMLRSVVPKiS------KMDRTSILGDTIDYTSE 177
                         589*********************66......**************665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.716129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-14132191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7135178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-14136191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00161224287No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEINEEGLFE ELLDVRGENW DTNPTEMSGI FSNGTWNFDD HKPSSTFLPL PFHQDYTYNF  60
NPIYCPFVDE FSSQSNTFDT PSFPLQQQHD DQESRFLVHQ LHKLDVKATC KTEPVQSPHP  120
DNPAKKLERQ PSKNLMAERR RRKRLNDRLL MLRSVVPKIS KMDRTSILGD TIDYTSELLE  180
RIKSLQQEVE AGSNMDHIFK GEKPNEMIVR NTPKFEVERR NGDTRIEICC RGDPGLLLST  240
VSTMEASGLE IQQCVISCFN DFAMHASCSE DLEQTTLMRC EDIKKALFRN AGYGGRCV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137144ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466677.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL16e-71BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0D2MAL80.0A0A0D2MAL8_G
STRINGVIT_18s0001g08040.t011e-111(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.17e-65beta HLH protein 93
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]